Perinatal expansion of pancreatic b cells is critical to metabolic adaptation. Yet, mechanisms surveying the fidelity by which proliferative events generate functional b cell pools remain unknown. We have previously identified a CCR2+ myeloid niche required for peri-natal b cell replication, with b cells dynamically responding to loss and repopulation of these myeloid cells with growth arrest and rebound expansion, respectively. Here, using a timed single-cell RNA-sequencing approach, we show that transient disruption of perinatal CCR2+ macrophages change islet b cell repertoires in young mice to resemble those of aged mice. Gene expression profiling and functional assays disclose prominent mitochondrial defects in b cells coupled to impaired redox states, NAD depletion, and DNA damage, leading to accelerated islets dysfunction with age. These findings reveal an unexpected vulnerability of mitochondrial b cells bioenergetics to the disruption of perinatal CCR2+ macrophages, implicating these cells in surveying early in life both the size and energy homeostasis of b cells populations.